Hey! Thanks for letting me know but aside that, I DO install applications from the original site as I said I downloaded paint.net,gimp, and Graal. Sure paint.net and gimp were downloaded from the wrong place but what about Graal? I downloaded that and a bunch of viruses hit me too? And it was from the actual site too! 
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What do you mean by "viruses"? I'm like 99% sure GIMP and Paint.NET don't have any. Also, do you have an antivirus?